BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB022B03LP1|AL427859
(208 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1256 393 e-110
>3x_Contig1256
Length = 6519
Score = 393 bits (195), Expect = e-110
Identities = 200/205 (97%)
Strand = Plus / Minus
Query: 1 ggagaagtcgatggtctcatactgcttctcccaccagaraggatctgagcgacattcttt 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 791 ggagaagtcgatggtctcatactgcttctcccaccagagaggatctgagcgacattcttt 732
Query: 61 gcaataragttcttctcagcaacgcatagtatttwwaccatggagatgatgagaccaata 120
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 731 gcaatagagttcttctcagcaacgcatagtatttttaccatggagatgatgagaccaata 672
Query: 121 ctgtcccacccttggtcaagtgataaacgccgcgtaaaagtgtataccaaatgtaaagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ctgtcccacccttggtcaagtgataaacgccgcgtaaaagtgtataccaaatgtaaagaa 612
Query: 181 taataataataataataawaataat 205
|||||||||||||||||| ||||||
Sbjct: 611 taataataataataataataataat 587
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.32
Gapped
Lambda K H
1.40 0.714 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2058
Number of Sequences: 1807
Number of extensions: 2058
Number of successful extensions: 609
Number of sequences better than 1.0e-20: 1
length of query: 208
length of database: 10,358,551
effective HSP length: 15
effective length of query: 193
effective length of database: 10,331,446
effective search space: 1993969078
effective search space used: 1993969078
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.2 bits)
S1: 12 (24.7 bits)
S2: 49 (99.2 bits)